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Thursday, 7 May 2020

YubiKey-guide

Guide to using YubiKey for GPG and SSH.


This is a guide to using YubiKey as a SmartCard for storing GPG encryption, signing and authentication keys, which can also be used for SSH. Many of the principles in this document are applicable to other smart card devices.
Keys stored on YubiKey are non-exportable (as opposed to file-based keys that are stored on disk) and are convenient for everyday use. Instead of having to remember and enter passphrases to unlock SSH/GPG keys, YubiKey needs only a physical touch after being unlocked with a PIN. All signing and encryption operations happen on the card, rather than in OS memory.
New! drduh/Purse is a password manager which uses GPG and YubiKey.
If you have a comment or suggestion, please open an Issue on GitHub.

Purchase

All YubiKeys except the blue "security key" model are compatible with this guide. NEO models are limited to 2048-bit RSA keys. Compare YubiKeys here.
To verify a YubiKey is genuine, open a browser with U2F support to https://www.yubico.com/genuine/. Insert a Yubico device, and select Verify Device to begin the process. Touch the YubiKey when prompted, and if asked, allow it to see the make and model of the device. If you see Verification complete, the device is authentic.
This website verifies YubiKey device attestation certificates signed by a set of Yubico certificate authorities, and helps mitigate supply chain attacks.

Download OS Image

You will need several small storage devices for booting a temporary operating system and creating backups of your private/public keys.
It is recommended to generate cryptographic keys and configure YubiKey from a secure operating system and using an ephemeral environment ("live image"), such as DebianTails, or OpenBSD booted from a USB drive.
Depending on your threat model and/or level of inherent trust in your own system, it may also be a valid option to run the live image within a virtual machine using virt-manager, VirtualBox, or VMWare software.
To use Debian, download the latest image:
$ curl -LfO https://cdimage.debian.org/debian-cd/current-live/amd64/iso-hybrid/debian-live-10.3.0-amd64-xfce.iso

$ curl -LfO https://cdimage.debian.org/debian-cd/current-live/amd64/iso-hybrid/SHA512SUMS

$ curl -LfO https://cdimage.debian.org/debian-cd/current-live/amd64/iso-hybrid/SHA512SUMS.sign
Verify the signature of the hashes file with GPG:
$ gpg --verify SHA512SUMS.sign SHA512SUMS
gpg: Signature made Sat Feb  8 18:02:16 2020 PST
gpg:                using RSA key DF9B9C49EAA9298432589D76DA87E80D6294BE9B
gpg: Can't check signature: No public key

$ gpg --keyserver hkps://keyring.debian.org --recv DF9B9C49EAA9298432589D76DA87E80D6294BE9B
gpg: key 0xDA87E80D6294BE9B: public key "Debian CD signing key " imported
gpg: Total number processed: 1
gpg:               imported: 1

$ gpg --verify SHA512SUMS.sign SHA512SUMS
gpg: Signature made Sat Feb  8 18:02:16 2020 PST
gpg:                using RSA key DF9B9C49EAA9298432589D76DA87E80D6294BE9B
gpg: Good signature from "Debian CD signing key " [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: DF9B 9C49 EAA9 2984 3258  9D76 DA87 E80D 6294 BE9B
If the public key cannot be received, try changing the DNS resolver and/or use a different keyserver:
$ gpg --keyserver hkps://keyserver.ubuntu.com:443 --recv DF9B9C49EAA9298432589D76DA87E80D6294BE9B
Ensure the SHA512 hash of the live image matches the one in the signed file.
$ grep $(sha512sum debian-live-10.3.0-amd64-xfce.iso) SHA512SUMS
SHA512SUMS:c6adede144eb32b7316b65342f7445cb13b95ef17551d47ce1a8468d3954710f5f68c979c1086aa1b94262c8bfd86679eb38b01731c7b9aaeaca690455f1ff7f  debian-live-10.3.0-amd64-xfce.iso
See Verifying authenticity of Debian CDs for more information.
Mount a storage device and copy the image to it:
Linux
$ sudo dmesg | tail
usb-storage 3-2:1.0: USB Mass Storage device detected
scsi host2: usb-storage 3-2:1.0
scsi 2:0:0:0: Direct-Access     TS-RDF5  SD  Transcend    TS3A PQ: 0 ANSI: 6
sd 2:0:0:0: Attached scsi generic sg1 type 0
sd 2:0:0:0: [sdb] 31116288 512-byte logical blocks: (15.9 GB/14.8 GiB)
sd 2:0:0:0: [sdb] Write Protect is off
sd 2:0:0:0: [sdb] Mode Sense: 23 00 00 00
sd 2:0:0:0: [sdb] Write cache: disabled, read cache: enabled, doesn't support DPO or FUA
sdb: sdb1 sdb2
sd 2:0:0:0: [sdb] Attached SCSI removable disk

$ sudo dd if=debian-live-10.3.0-amd64-xfce.iso of=/dev/sdb bs=4M; sync
465+1 records in
465+1 records out
1951432704 bytes (2.0 GB, 1.8 GiB) copied, 42.8543 s, 45.5 MB/s
OpenBSD
$ dmesg | tail -n2
sd2 at scsibus4 targ 1 lun 0:  SCSI4 0/direct removable serial.0000000000000
sd2: 15193MB, 512 bytes/sector, 31116288 sectors

$ doas dd if=debian-live-10.3.0-amd64-xfce.iso of=/dev/rsd2c bs=4m
465+1 records in
465+1 records out
1951432704 bytes transferred in 139.125 secs (14026448 bytes/sec)
Shut down the computer and disconnect internal hard drives and all unnecessary peripheral devices. If being run within a VM, this part can be skipped as no such devices should be attached to the VM since the image will still be run as a "live image".
If on physical hardware consider using secure hardware like a ThinkPad X230 running Coreboot and cleaned of Intel ME.

Required software

Boot the live image and configure networking.
Note If the screen locks, unlock with user/live.
Open the terminal and install required software packages.

Debian and Ubuntu

Note Live Ubuntu images may require modification to /etc/apt/sources.list
$ sudo apt update

$ sudo apt -y upgrade

$ sudo apt -y install wget gnupg2 gnupg-agent dirmngr cryptsetup scdaemon pcscd secure-delete hopenpgp-tools yubikey-personalization
To install and use the ykman utility:
$ sudo apt -y install python-pip python-pyscard

$ pip install yubikey-manager

$ sudo service pcscd start

$ ~/.local/bin/ykman openpgp info

Arch

$ sudo pacman -Syu gnupg pcsclite ccid hopenpgp-tools yubikey-personalization

RHEL7

$ sudo yum install -y gnupg2 pinentry-curses pcsc-lite pcsc-lite-libs gnupg2-smime

NixOS

Generate a NixOS LiveCD image with the given config:
# yubikey-installer.nix
{ nixpkgs ? , system ? "x86_64-linux" } :

let
  config = { pkgs, ... }:
  with pkgs; {
    imports = [  ];

    boot.kernelPackages = linuxPackages_latest;

    services.pcscd.enable = true;
    services.udev.packages = [ yubikey-personalization ];

    environment.systemPackages = [ gnupg pinentry-curses pinentry-qt paperkey wget ];

    programs = {
      ssh.startAgent = false;
      gnupg.agent = {
        enable = true;
        enableSSHSupport = true;
      };
    };
  };

  evalNixos = configuration: import  {
    inherit system configuration;
  };

in {
  iso = (evalNixos config).config.system.build.isoImage;
}
Build the installer and copy it to a USB drive.
$ nix build -f yubikey-installer.nix --out-link installer

$ sudo cp -v installer/iso/*.iso /dev/sdb; sync
'installer/iso/nixos-20.03.git.c438ce1-x86_64-linux.iso' -> '/dev/sdb'
On NixOS, ensure that you have pinentry-program /run/current-system/sw/bin/pinentry-curses in your $GNUPGHOME/gpg-agent.conf before running any gpg commands.

OpenBSD

$ doas pkg_add gnupg pcsc-tools

macOS

Download and install Homebrew and the following packages:
$ brew install gnupg yubikey-personalization hopenpgp-tools ykman pinentry-mac
Note An additional Python package dependency may need to be installed to use ykman - pip install yubikey-manager

Windows

Download and install Gpg4Win and PuTTY.
You may also need more recent versions of yubikey-personalization and yubico-c.

Entropy

Generating cryptographic keys requires high-quality randomness, measured as entropy.
To check the available entropy available on Linux:
$ cat /proc/sys/kernel/random/entropy_avail
849
Most operating systems use software-based pseudorandom number generators. A hardware random number generator like OneRNG will increase the speed of entropy generation and possibly the quality.
Install and configure OneRNG software:
$ sudo apt -y install at rng-tools python-gnupg openssl

$ wget https://github.com/OneRNG/onerng.github.io/raw/master/sw/onerng_3.6-1_all.deb

$ sha256sum onerng_3.6-1_all.deb
a9ccf7b04ee317dbfc91518542301e2d60ebe205d38e80563f29aac7cd845ccb  onerng_3.6-1_all.deb

$ sudo dpkg -i onerng_3.6-1_all.deb

$ echo "HRNGDEVICE=/dev/ttyACM0" | sudo tee /etc/default/rng-tools
Plug in the device and restart rng-tools:
$ sudo atd

$ sudo service rng-tools restart
Test by emptying /dev/random - the light on the device will dim briefly:
$ cat /dev/random >/dev/null
[Press Control-C]
After a few seconds, verify the available entropy pool is quickly re-seeded:
$ cat /proc/sys/kernel/random/entropy_avail
3049
An entropy pool value greater than 2000 is sufficient.

Creating keys

Temporary working directory

Create a temporary directory which will be cleared on reboot and set it as the GnuPG directory:
$ export GNUPGHOME=$(mktemp -d)
Otherwise, to preserve the working environment, set the GnuPG directory to your home folder:
$ export GNUPGHOME=~/gnupg-workspace

Harden configuration

Create a hardened configuration in the temporary working directory with the following options:
$ wget -O $GNUPGHOME/gpg.conf https://raw.githubusercontent.com/drduh/config/master/gpg.conf

$ grep -ve "^#" $GNUPGHOME/gpg.conf
personal-cipher-preferences AES256 AES192 AES
personal-digest-preferences SHA512 SHA384 SHA256
personal-compress-preferences ZLIB BZIP2 ZIP Uncompressed
default-preference-list SHA512 SHA384 SHA256 AES256 AES192 AES ZLIB BZIP2 ZIP Uncompressed
cert-digest-algo SHA512
s2k-digest-algo SHA512
s2k-cipher-algo AES256
charset utf-8
fixed-list-mode
no-comments
no-emit-version
keyid-format 0xlong
list-options show-uid-validity
verify-options show-uid-validity
with-fingerprint
require-cross-certification
no-symkey-cache
use-agent
throw-keyids
Disable networking for the remainder of the setup.

Master key

The first key to generate is the master key. It will be used for certification only: to issue sub-keys that are used for encryption, signing and authentication.
Important The master key should be kept offline at all times and only accessed to revoke or issue new sub-keys. Keys can also be generated on the YubiKey itself to ensure no other copies exist.
You'll be prompted to enter and verify a passphrase - keep it handy as you'll need it multiple times later.
Generate a strong passphrase which could be written down in a secure place or memorized:
$ gpg --gen-random --armor 0 24
ydOmByxmDe63u7gqx2XI9eDgpvJwibNH
On Linux or OpenBSD, select the password using the mouse or by double-clicking on it to copy to clipboard. Paste using the middle mouse button or Shift-Insert.
Generate a new key with GPG, selecting (8) RSA (set your own capabilities)Certify capability only and 4096 bit key size.
Do not set the master key to expire - see Note #3.
$ gpg --expert --full-generate-key

Please select what kind of key you want:
   (1) RSA and RSA (default)
   (2) DSA and Elgamal
   (3) DSA (sign only)
   (4) RSA (sign only)
   (7) DSA (set your own capabilities)
   (8) RSA (set your own capabilities)
   (9) ECC and ECC
  (10) ECC (sign only)
  (11) ECC (set your own capabilities)
  (13) Existing key
Your selection? 8

Possible actions for a RSA key: Sign Certify Encrypt Authenticate
Current allowed actions: Sign Certify Encrypt

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? E

Possible actions for a RSA key: Sign Certify Encrypt Authenticate
Current allowed actions: Sign Certify

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? S

Possible actions for a RSA key: Sign Certify Encrypt Authenticate
Current allowed actions: Certify

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? Q
RSA keys may be between 1024 and 4096 bits long.
What keysize do you want? (2048) 4096
Requested keysize is 4096 bits
Please specify how long the key should be valid.
         0 = key does not expire
        = key expires in n days
      w = key expires in n weeks
      m = key expires in n months
      y = key expires in n years
Key is valid for? (0) 0
Key does not expire at all
Is this correct? (y/N) y
Input any name and email address:
GnuPG needs to construct a user ID to identify your key.

Real name: Dr Duh
Email address: doc@duh.to
Comment: [Optional - leave blank]
You selected this USER-ID:
    "Dr Duh "

Change (N)ame, (C)omment, (E)mail or (O)kay/(Q)uit? o

We need to generate a lot of random bytes. It is a good idea to perform
some other action (type on the keyboard, move the mouse, utilize the
disks) during the prime generation; this gives the random number
generator a better chance to gain enough entropy.

gpg: /tmp.FLZC0xcM/trustdb.gpg: trustdb created
gpg: key 0xFF3E7D88647EBCDB marked as ultimately trusted
gpg: directory '/tmp.FLZC0xcM/openpgp-revocs.d' created
gpg: revocation certificate stored as '/tmp.FLZC0xcM/openpgp-revocs.d/011CE16BD45B27A55BA8776DFF3E7D88647EBCDB.rev'
public and secret key created and signed.

pub   rsa4096/0xFF3E7D88647EBCDB 2017-10-09 [C]
      Key fingerprint = 011C E16B D45B 27A5 5BA8  776D FF3E 7D88 647E BCDB
uid                              Dr Duh 
Export the key ID as a variable (KEYID) for use later:
$ export KEYID=0xFF3E7D88647EBCDB

Sign with existing key

(Optional) If you already have a PGP key, you may want to sign the new key with the old one to prove that the new key is controlled by you.
Export your existing key to move it to the working keyring:
$ gpg --export-secret-keys --armor --output /tmp/new.sec
Then sign the new key:
$ gpg  --default-key $OLDKEY --sign-key $KEYID

Sub-keys

Edit the master key to add sub-keys:
$ gpg --expert --edit-key $KEYID

Secret key is available.

sec  rsa4096/0xEA5DE91459B80592
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
[ultimate] (1). Dr Duh 
Use 4096-bit RSA keys.
Use a 1 year expiration for sub-keys - they can be renewed using the offline master key. See rotating keys.

Signing

Create a signing key by selecting (4) RSA (sign only):
gpg> addkey
Key is protected.

You need a passphrase to unlock the secret key for
user: "Dr Duh "
4096-bit RSA key, ID 0xFF3E7D88647EBCDB, created 2016-05-24

Please select what kind of key you want:
   (3) DSA (sign only)
   (4) RSA (sign only)
   (5) Elgamal (encrypt only)
   (6) RSA (encrypt only)
   (7) DSA (set your own capabilities)
   (8) RSA (set your own capabilities)
Your selection? 4
RSA keys may be between 1024 and 4096 bits long.
What keysize do you want? (2048) 4096
Requested keysize is 4096 bits
Please specify how long the key should be valid.
         0 = key does not expire
        = key expires in n days
      w = key expires in n weeks
      m = key expires in n months
      y = key expires in n years
Key is valid for? (0) 1y
Key expires at Mon 10 Sep 2018 00:00:00 PM UTC
Is this correct? (y/N) y
Really create? (y/N) y
We need to generate a lot of random bytes. It is a good idea to perform
some other action (type on the keyboard, move the mouse, utilize the
disks) during the prime generation; this gives the random number
generator a better chance to gain enough entropy.

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09       usage: S
[ultimate] (1). Dr Duh 

Encryption

Next, create an encryption key by selecting (6) RSA (encrypt only):
gpg> addkey
Please select what kind of key you want:
   (3) DSA (sign only)
   (4) RSA (sign only)
   (5) Elgamal (encrypt only)
   (6) RSA (encrypt only)
   (7) DSA (set your own capabilities)
   (8) RSA (set your own capabilities)
  (10) ECC (sign only)
  (11) ECC (set your own capabilities)
  (12) ECC (encrypt only)
  (13) Existing key
Your selection? 6
RSA keys may be between 1024 and 4096 bits long.
What keysize do you want? (2048) 4096
Requested keysize is 4096 bits
Please specify how long the key should be valid.
         0 = key does not expire
        = key expires in n days
      w = key expires in n weeks
      m = key expires in n months
      y = key expires in n years
Key is valid for? (0) 1y
Key expires at Mon 10 Sep 2018 00:00:00 PM UTC
Is this correct? (y/N) y
Really create? (y/N) y
We need to generate a lot of random bytes. It is a good idea to perform
some other action (type on the keyboard, move the mouse, utilize the
disks) during the prime generation; this gives the random number
generator a better chance to gain enough entropy.

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09       usage: E
[ultimate] (1). Dr Duh 

Authentication

Finally, create an authentication key.
GPG doesn't provide an authenticate-only key type, so select (8) RSA (set your own capabilities) and toggle the required capabilities until the only allowed action is Authenticate:
gpg> addkey
Please select what kind of key you want:
   (3) DSA (sign only)
   (4) RSA (sign only)
   (5) Elgamal (encrypt only)
   (6) RSA (encrypt only)
   (7) DSA (set your own capabilities)
   (8) RSA (set your own capabilities)
  (10) ECC (sign only)
  (11) ECC (set your own capabilities)
  (12) ECC (encrypt only)
  (13) Existing key
Your selection? 8

Possible actions for a RSA key: Sign Encrypt Authenticate
Current allowed actions: Sign Encrypt

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? S

Possible actions for a RSA key: Sign Encrypt Authenticate
Current allowed actions: Encrypt

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? E

Possible actions for a RSA key: Sign Encrypt Authenticate
Current allowed actions:

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? A

Possible actions for a RSA key: Sign Encrypt Authenticate
Current allowed actions: Authenticate

   (S) Toggle the sign capability
   (E) Toggle the encrypt capability
   (A) Toggle the authenticate capability
   (Q) Finished

Your selection? Q
RSA keys may be between 1024 and 4096 bits long.
What keysize do you want? (2048) 4096
Requested keysize is 4096 bits
Please specify how long the key should be valid.
         0 = key does not expire
        = key expires in n days
      w = key expires in n weeks
      m = key expires in n months
      y = key expires in n years
Key is valid for? (0) 1y
Key expires at Mon 10 Sep 2018 00:00:00 PM UTC
Is this correct? (y/N) y
Really create? (y/N) y
We need to generate a lot of random bytes. It is a good idea to perform
some other action (type on the keyboard, move the mouse, utilize the
disks) during the prime generation; this gives the random number
generator a better chance to gain enough entropy.

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09       usage: A
[ultimate] (1). Dr Duh 
Finish by saving the keys.
gpg> save

Add extra identities

(Optional) To add additional email addresses or identities, use adduid:
gpg> adduid
Real name: Dr Duh
Email address: DrDuh@other.org
Comment:
You selected this USER-ID:
    "Dr Duh "

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: SC
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: never       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: never       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: never       usage: A
[ultimate] (1). Dr Duh 
[ unknown] (2). Dr Duh 

gpg> trust
sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: SC
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: never       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: never       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: never       usage: A
[ultimate] (1). Dr Duh 
[ unknown] (2). Dr Duh 

Please decide how far you trust this user to correctly verify other users' keys
(by looking at passports, checking fingerprints from different sources, etc.)

  1 = I don't know or won't say
  2 = I do NOT trust
  3 = I trust marginally
  4 = I trust fully
  5 = I trust ultimately
  m = back to the main menu

Your decision? 5
Do you really want to set this key to ultimate trust? (y/N) y

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: SC
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: never       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: never       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: never       usage: A
[ultimate] (1). Dr Duh 
[ unknown] (2). Dr Duh 

gpg> uid 1

sec  rsa4096/0xFF3E7D88647EBCDB
created: 2017-10-09  expires: never       usage: SC
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: never       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: never       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: never       usage: A
[ultimate] (1)* Dr Duh 
[ unknown] (2). Dr Duh 

gpg> primary

sec  rsa4096/0xFF3E7D88647EBCDB
created: 2017-10-09  expires: never       usage: SC
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: never       usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: never       usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: never       usage: A
[ultimate] (1)* Dr Duh 
[ unknown] (2)  Dr Duh 

gpg> save
By default, the last identity added will be the primary user ID - use primary to change that.

Verify

List the generated secret keys and verify the output:
$ gpg -K
/tmp.FLZC0xcM/pubring.kbx
-------------------------------------------------------------------------
sec   rsa4096/0xFF3E7D88647EBCDB 2017-10-09 [C]
      Key fingerprint = 011C E16B D45B 27A5 5BA8  776D FF3E 7D88 647E BCDB
uid                            Dr Duh 
ssb   rsa4096/0xBECFA3C1AE191D15 2017-10-09 [S] [expires: 2018-10-09]
ssb   rsa4096/0x5912A795E90DD2CF 2017-10-09 [E] [expires: 2018-10-09]
ssb   rsa4096/0x3F29127E79649A3D 2017-10-09 [A] [expires: 2018-10-09]
Add any additional identities or email addresses you wish to associate using the adduid command.
Tip Verify with a OpenPGP key best practice checker:
$ gpg --export $KEYID | hokey lint
The output will display any problems with your key in red text. If everything is green, your key passes each of the tests. If it is red, your key has failed one of the tests.
hokey may warn (orange text) about cross certification for the authentication key. GPG's Signing Subkey Cross-Certification documentation has more detail on cross certification, and gpg v2.2.1 notes "subkey does not sign and so does not need to be cross-certified". hokey may also indicate a problem (red text) with Key expiration times: [] on the primary key (see Note #3 about not setting an expiry for the primary key).

Export secret keys

The master key and sub-keys will be encrypted with your passphrase when exported.
Save a copy of your keys:
$ gpg --armor --export-secret-keys $KEYID > $GNUPGHOME/mastersub.key

$ gpg --armor --export-secret-subkeys $KEYID > $GNUPGHOME/sub.key
On Windows, note that using any extension other than .gpg or attempting IO redirection to a file will garble the secret key, making it impossible to import it again at a later date:
$ gpg -o \path\to\dir\mastersub.gpg --armor --export-secret-keys $KEYID

$ gpg -o \path\to\dir\sub.gpg --armor --export-secret-subkeys $KEYID

Revocation certificate

Although we will backup and store the master key in a safe place, it is best practice to never rule out the possibility of losing it or having the backup fail. Without the master key, it will be impossible to renew or rotate subkeys or generate a revocation certificate, the PGP identity will be useless.
Even worse, we cannot advertise this fact in any way to those that are using our keys. It is reasonable to assume this will occur at some point and the only remaining way to deprecate orphaned keys is a revocation certificate.
To create the revocation certificate:
$ gpg --gen-revoke $KEYID --output $GNUPGHOME/revoke.asc
The revoke.asc certificate file should be stored (or printed) in a (secondary) place that allows retrieval in case the main backup fails.

Backup

Once keys are moved to YubiKey, they cannot be moved again! Create an encrypted backup of the keyring and consider using a paper copy of the keys as an additional backup measure.
Tip The ext2 filesystem (without encryption) can be mounted on both Linux and OpenBSD. Consider using a FAT32/NTFS filesystem for MacOS/Windows compatibility instead.
Linux
Attach another external storage device and check its label:
$ sudo dmesg | tail
mmc0: new high speed SDHC card at address a001
mmcblk0: mmc0:a001 SS16G 14.8 GiB

$ sudo fdisk -l /dev/mmcblk0
Disk /dev/mmcblk0: 14.9 GiB, 15931539456 bytes, 31116288 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 512 bytes
I/O size (minimum/optimal): 512 bytes / 512 bytes
Write it with random data to prepare for encryption:
$ sudo dd if=/dev/urandom of=/dev/mmcblk0 bs=4M status=progress
Erase and create a new partition table:
$ sudo fdisk /dev/mmcblk0

Welcome to fdisk (util-linux 2.33.1).
Changes will remain in memory only, until you decide to write them.
Be careful before using the write command.

Device does not contain a recognized partition table.
Created a new DOS disklabel with disk identifier 0x3c1ad14a.

Command (m for help): o
Created a new DOS disklabel with disk identifier 0xd756b789.

Command (m for help): w
The partition table has been altered.
Calling ioctl() to re-read partition table.
Syncing disks.
Create a new partition with a 25 Megabyte size:
$ sudo fdisk /dev/mmcblk0

Welcome to fdisk (util-linux 2.33.1).
Changes will remain in memory only, until you decide to write them.
Be careful before using the write command.

Command (m for help): n
Partition type
   p   primary (0 primary, 0 extended, 4 free)
   e   extended (container for logical partitions)
Select (default p): p
Partition number (1-4, default 1):
First sector (2048-31116287, default 2048):
Last sector, +/-sectors or +/-size{K,M,G,T,P} (2048-31116287, default 31116287): +25M

Created a new partition 1 of type 'Linux' and of size 25 MiB.

Command (m for help): w
The partition table has been altered.
Calling ioctl() to re-read partition table.
Syncing disks.
Use LUKS to encrypt the new partition:
$ sudo cryptsetup luksFormat /dev/mmcblk0p1

WARNING!
========
This will overwrite data on /dev/mmcblk0p1 irrevocably.

Are you sure? (Type uppercase yes): YES
Enter passphrase for /dev/mmcblk0p1:
Verify passphrase:
Mount the partition:
$ sudo cryptsetup luksOpen /dev/mmcblk0p1 secret
Enter passphrase for /dev/mmcblk0p1:
Create a filesystem:
$ sudo mkfs.ext2 /dev/mapper/secret -L gpg-$(date +%F)
Creating filesystem with 9216 1k blocks and 2304 inodes
Superblock backups stored on blocks:
        8193

Allocating group tables: done
Writing inode tables: done
Writing superblocks and filesystem accounting information: done
Mount the filesystem and copy the temporary directory with the keyring:
$ sudo mkdir /mnt/encrypted-storage

$ sudo mount /dev/mapper/secret /mnt/encrypted-storage

$ sudo cp -avi $GNUPGHOME /mnt/encrypted-storage/
Optional Backup the OneRNG package:
$ sudo cp onerng_3.6-1_all.deb /mnt/encrypted-storage/
Keep the backup mounted if you plan on setting up two or more keys as keytocard will delete the local copy on save.
Unmount, close and disconnected the encrypted volume:
$ sudo umount /mnt/encrypted-storage/

$ sudo cryptsetup luksClose secret
OpenBSD
Attach a USB disk and determine its label:
$ dmesg | grep sd.\ at
sd2 at scsibus5 targ 1 lun 0:  SCSI4 0/direct removable serial.00000000000000000000
Print the existing partitions to make sure it's the right device:
$ doas disklabel -h sd2
Initialize the disk by creating an a partition with FS type RAID and size of 25 Megabytes:
$ doas fdisk -iy sd2
Writing MBR at offset 0.

$ doas disklabel -E sd2
Label editor (enter '?' for help at any prompt)
sd2> a a
offset: [64]
size: [31101776] 25M
FS type: [4.2BSD] RAID
sd2*> w
sd2> q
No label changes
Encrypt with bioctl:
$ doas bioctl -c C -l sd2a softraid0
New passphrase:
Re-type passphrase:
softraid0: CRYPTO volume attached as sd3
Create an i partition on the new crypto volume and the filesystem:
$ doas fdisk -iy sd3
Writing MBR at offset 0.

$ doas disklabel -E sd3
Label editor (enter '?' for help at any prompt)
sd3> a i
offset: [64]
size: [16001]
FS type: [4.2BSD]
sd3*> w
sd3> q
No label changes.

$ doas newfs sd3i
Mount the filesystem and copy the temporary directory with the keyring:
$ doas mkdir /mnt/encrypted-storage

$ doas mount /dev/sd3i /mnt/encrypted-storage

$ doas cp -avi $GNUPGHOME /mnt/encrypted-storage
Keep the backup mounted if you plan on setting up two or more keys as keytocard will delete the local copy on save.
Otherwise, unmount and disconnected the encrypted volume:
$ doas umount /mnt/encrypted-storage

$ doas bioctl -d sd3
See OpenBSD FAQ#14 for more information.

Export public keys

Important Without the public key, you will not be able to use GPG to encrypt, decrypt, nor sign messages. However, you will still be able to use YubiKey for SSH authentication.
Create another partition on the removable storage device to store the public key, or reconnect networking and upload to a key server.
Linux
$ sudo fdisk /dev/mmcblk0

Command (m for help): n
Partition type
   p   primary (1 primary, 0 extended, 3 free)
   e   extended (container for logical partitions)
Select (default p):
Partition number (2-4, default 2):
First sector (22528-31116287, default 22528):
Last sector, +sectors or +size{K,M,G,T,P} (22528-31116287, default 31116287): +25M

Created a new partition 2 of type 'Linux' and of size 25 MiB.

Command (m for help): w
The partition table has been altered.
Calling ioctl() to re-read partition table.
Syncing disks.

$ sudo mkfs.ext2 /dev/mmcblk0p2
Creating filesystem with 10240 1k blocks and 2560 inodes
Superblock backups stored on blocks:
        8193

Allocating group tables: done
Writing inode tables: done
Writing superblocks and filesystem accounting information: done

$ sudo mkdir /mnt/public

$ sudo mount /dev/mmcblk0p2 /mnt/public/

$ gpg --armor --export $KEYID | sudo tee /mnt/public/$KEYID-$(date +%F).txt
OpenBSD
$ doas disklabel -E sd2
Label editor (enter '?' for help at any prompt)
sd2> a b
offset: [32130]
size: [31069710] 25M
FS type: [swap] 4.2BSD
sd2*> w
sd2> q
No label changes.

$ doas newfs sd2b

$ doas mkdir /mnt/public

$ doas mount /dev/sd2b /mnt/public

$ gpg --armor --export $KEYID | doas tee /mnt/public/$KEYID.txt
Windows
$ gpg -o \path\to\dir\pubkey.gpg --armor --export $KEYID
Keyserver
(Optional) Upload the public key to a public keyserver:
$ gpg --send-key $KEYID

$ gpg --keyserver pgp.mit.edu --send-key $KEYID

$ gpg --keyserver keys.gnupg.net --send-key $KEYID

$ gpg --keyserver hkps://keyserver.ubuntu.com:443 --send-key $KEYID
After some time, the public key will to propagate to other servers.

Configure Smartcard

Use GPG to configure YubiKey as a smartcard:
$ gpg --card-edit
Reader ...........: Yubico Yubikey 4 OTP U2F CCID
Application ID ...: D2760001240102010006055532110000
Version ..........: 3.4
Manufacturer .....: Yubico
Serial number ....: 05553211
Name of cardholder: [not set]
Language prefs ...: [not set]
Sex ..............: unspecified
URL of public key : [not set]
Login data .......: [not set]
Signature PIN ....: not forced
Key attributes ...: rsa2048 rsa2048 rsa2048
Max. PIN lengths .: 127 127 127
PIN retry counter : 3 0 3
Signature counter : 0
Signature key ....: [none]
Encryption key....: [none]
Authentication key: [none]
General key info..: [none]
Windows
Use the YubiKey Manager application (note, this not the similarly named older YubiKey NEO Manager) to enable CCID functionality.

Change PIN

The default PIN is 123456 and default Admin PIN (PUK) is 12345678. CCID-mode PINs can be up to 127 ASCII characters.
The Admin PIN is required for some card operations and to unblock a PIN that has been entered incorrectly more than three times. See the GnuPG documentation on Managing PINs for details.
gpg/card> admin
Admin commands are allowed

gpg/card> passwd
gpg: OpenPGP card no. D2760001240102010006055532110000 detected

1 - change PIN
2 - unblock PIN
3 - change Admin PIN
4 - set the Reset Code
Q - quit

Your selection? 3
PIN changed.

1 - change PIN
2 - unblock PIN
3 - change Admin PIN
4 - set the Reset Code
Q - quit

Your selection? 1
PIN changed.

1 - change PIN
2 - unblock PIN
3 - change Admin PIN
4 - set the Reset Code
Q - quit

Your selection? q

Set information

Some fields are optional.
gpg/card> name
Cardholder's surname: Duh
Cardholder's given name: Dr

gpg/card> lang
Language preferences: en

gpg/card> login
Login data (account name): doc@duh.to

gpg/card> list

Application ID ...: D2760001240102010006055532110000
Version ..........: 3.4
Manufacturer .....: unknown
Serial number ....: 05553211
Name of cardholder: Dr Duh
Language prefs ...: en
Sex ..............: unspecified
URL of public key : [not set]
Login data .......: doc@duh.to
Private DO 4 .....: [not set]
Signature PIN ....: not forced
Key attributes ...: rsa2048 rsa2048 rsa2048
Max. PIN lengths .: 127 127 127
PIN retry counter : 3 0 3
Signature counter : 0
Signature key ....: [none]
Encryption key....: [none]
Authentication key: [none]
General key info..: [none]

gpg/card> quit

Transfer keys

Important Transferring keys to YubiKey using keytocard is a destructive, one-way operation only. Make sure you've made a backup before proceeding: keytocard converts the local, on-disk key into a stub, which means the on-disk copy is no longer usable to transfer to subsequent security key devices or mint additional keys.
Previous GPG versions required the toggle command before selecting keys. The currently selected key(s) are indicated with an *. When moving keys only one key should be selected at a time.
$ gpg --edit-key $KEYID

Secret key is available.

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09  usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

Signing

You will be prompted for the master key passphrase and Admin PIN.
Select and transfer the signature key.
gpg> key 1

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb* rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09  usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> keytocard
Please select where to store the key:
   (1) Signature key
   (3) Authentication key
Your selection? 1

You need a passphrase to unlock the secret key for
user: "Dr Duh "
4096-bit RSA key, ID 0xBECFA3C1AE191D15, created 2016-05-24

Encryption

Type key 1 again to de-select and key 2 to select the next key:
gpg> key 1

gpg> key 2

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09  usage: S
ssb* rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> keytocard
Please select where to store the key:
   (2) Encryption key
Your selection? 2

[...]

Authentication

Type key 2 again to deselect and key 3 to select the last key:
gpg> key 2

gpg> key 3

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09  usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09  usage: E
ssb* rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> keytocard
Please select where to store the key:
   (3) Authentication key
Your selection? 3
Save and quit:
gpg> save

Verify card

Verify the sub-keys have been moved to YubiKey as indicated by ssb>:
$ gpg -K
/tmp.FLZC0xcM/pubring.kbx
-------------------------------------------------------------------------
sec   rsa4096/0xFF3E7D88647EBCDB 2017-10-09 [C]
      Key fingerprint = 011C E16B D45B 27A5 5BA8  776D FF3E 7D88 647E BCDB
uid                            Dr Duh 
ssb>  rsa4096/0xBECFA3C1AE191D15 2017-10-09 [S] [expires: 2018-10-09]
ssb>  rsa4096/0x5912A795E90DD2CF 2017-10-09 [E] [expires: 2018-10-09]
ssb>  rsa4096/0x3F29127E79649A3D 2017-10-09 [A] [expires: 2018-10-09]

Multiple keys

To provision additional security keys, restore the master key backup and repeat the Configure Smartcard procedure.
$ mv -vi $GNUPGHOME $GNUPGHOME.1
renamed '/tmp.FLZC0xcM' -> '/tmp.FLZC0xcM.1'

$ cp -avi /mnt/encrypted-storage/tmp.XXX $GNUPGHOME
'/mnt/encrypted-storage/tmp.FLZC0xcM' -> '/tmp.FLZC0xcM'

$ cd $GNUPGHOME

Cleanup

Ensure you have:
  • Saved encryption, signing and authentication sub-keys to YubiKey (gpg -K should show ssb> for sub-keys).
  • Saved the YubiKey user and admin PINs which you changed from defaults.
  • Saved the password to the GPG master key.
  • Saved a copy of the master key, sub-keys and revocation certificate on an encrypted volume, to be stored offline.
  • Saved the password to that encrypted volume in a separate location.
  • Saved a copy of the public key somewhere easily accessible later.
Reboot or securely delete $GNUPGHOME and remove the secret keys from the GPG keyring:
$ sudo srm -r $GNUPGHOME || sudo rm -rf $GNUPGHOME

$ gpg --delete-secret-key $KEYID
Important Make sure you have securely erased all generated keys and revocation certificates if an ephemeral enviroment was not used!

Using keys

$ cd ~/.gnupg ; wget https://raw.githubusercontent.com/drduh/config/master/gpg.conf

$ chmod 600 gpg.conf
Install the required packages and mount the non-encrypted volume created earlier:
Linux
$ sudo apt update && sudo apt install -y gnupg2 gnupg-agent gnupg-curl scdaemon pcscd

$ sudo mount /dev/mmcblk0p2 /mnt
OpenBSD
$ doas pkg_add gnupg pcsc-tools

$ doas mount /dev/sd2b /mnt
Import the public key file:
$ gpg --import /mnt/0x*txt
gpg: key 0xFF3E7D88647EBCDB: public key "Dr Duh " imported
gpg: Total number processed: 1
gpg:               imported: 1
Or download the public key from a keyserver:
$ gpg --recv $KEYID
gpg: requesting key 0xFF3E7D88647EBCDB from hkps server hkps.pool.sks-keyservers.net
[...]
gpg: key 0xFF3E7D88647EBCDB: public key "Dr Duh " imported
gpg: Total number processed: 1
gpg:               imported: 1
Edit the master key to assign it ultimate trust by selecting trust and 5:
$ export KEYID=0xFF3E7D88647EBCDB

$ gpg --edit-key $KEYID

gpg> trust
pub  4096R/0xFF3E7D88647EBCDB  created: 2016-05-24  expires: never       usage: C
                               trust: unknown       validity: unknown
sub  4096R/0xBECFA3C1AE191D15  created: 2017-10-09  expires: 2018-10-09  usage: S
sub  4096R/0x5912A795E90DD2CF  created: 2017-10-09  expires: 2018-10-09  usage: E
sub  4096R/0x3F29127E79649A3D  created: 2017-10-09  expires: 2018-10-09  usage: A
[ unknown] (1). Dr Duh 

Please decide how far you trust this user to correctly verify other users' keys
(by looking at passports, checking fingerprints from different sources, etc.)

  1 = I don't know or won't say
  2 = I do NOT trust
  3 = I trust marginally
  4 = I trust fully
  5 = I trust ultimately
  m = back to the main menu

Your decision? 5
Do you really want to set this key to ultimate trust? (y/N) y

pub  4096R/0xFF3E7D88647EBCDB  created: 2016-05-24  expires: never       usage: C
                               trust: ultimate      validity: unknown
sub  4096R/0xBECFA3C1AE191D15  created: 2017-10-09  expires: 2018-10-09  usage: S
sub  4096R/0x5912A795E90DD2CF  created: 2017-10-09  expires: 2018-10-09  usage: E
sub  4096R/0x3F29127E79649A3D  created: 2017-10-09  expires: 2018-10-09  usage: A
[ unknown] (1). Dr Duh 

gpg> quit
Remove and re-insert YubiKey and check the status:
$ gpg --card-status
Reader ...........: Yubico YubiKey OTP FIDO CCID 00 00
Application ID ...: D2760001240102010006055532110000
Version ..........: 3.4
Manufacturer .....: Yubico
Serial number ....: 05553211
Name of cardholder: Dr Duh
Language prefs ...: en
Sex ..............: unspecified
URL of public key : [not set]
Login data .......: doc@duh.to
Signature PIN ....: not forced
Key attributes ...: rsa4096 rsa4096 rsa4096
Max. PIN lengths .: 127 127 127
PIN retry counter : 3 3 3
Signature counter : 0
Signature key ....: 07AA 7735 E502 C5EB E09E  B8B0 BECF A3C1 AE19 1D15
      created ....: 2016-05-24 23:22:01
Encryption key....: 6F26 6F46 845B BEB8 BDF3  7E9B 5912 A795 E90D D2CF
      created ....: 2016-05-24 23:29:03
Authentication key: 82BE 7837 6A3F 2E7B E556  5E35 3F29 127E 7964 9A3D
      created ....: 2016-05-24 23:36:40
General key info..: pub  4096R/0xBECFA3C1AE191D15 2016-05-24 Dr Duh 
sec#  4096R/0xFF3E7D88647EBCDB  created: 2016-05-24  expires: never
ssb>  4096R/0xBECFA3C1AE191D15  created: 2017-10-09  expires: 2018-10-09
                      card-no: 0006 05553211
ssb>  4096R/0x5912A795E90DD2CF  created: 2017-10-09  expires: 2018-10-09
                      card-no: 0006 05553211
ssb>  4096R/0x3F29127E79649A3D  created: 2017-10-09  expires: 2018-10-09
                      card-no: 0006 05553211
sec# indicates master key is not available (as it should be stored encrypted offline).
Note If you see General key info..: [none] in the output instead - go back and import the public key using the previous step.
Encrypt a message to your own key (useful for storing password credentials and other data):
$ echo "test message string" | gpg --encrypt --armor --recipient $KEYID -o encrypted.txt
To encrypt to multiple recipients (or to multiple keys):
$ echo "test message string" | gpg --encrypt --armor --recipient $KEYID_0 --recipient $KEYID_1 --recipient $KEYID_2 -o encrypted.txt
Decrypt the message:
$ gpg --decrypt --armor encrypted.txt
gpg: anonymous recipient; trying secret key 0x0000000000000000 ...
gpg: okay, we are the anonymous recipient.
gpg: encrypted with RSA key, ID 0x0000000000000000
test message string
Sign a message:
$ echo "test message string" | gpg --armor --clearsign > signed.txt
Verify the signature:
$ gpg --verify signed.txt
gpg: Signature made Wed 25 May 2016 00:00:00 AM UTC
gpg:                using RSA key 0xBECFA3C1AE191D15
gpg: Good signature from "Dr Duh " [ultimate]
Primary key fingerprint: 011C E16B D45B 27A5 5BA8  776D FF3E 7D88 647E BCDB
     Subkey fingerprint: 07AA 7735 E502 C5EB E09E  B8B0 BECF A3C1 AE19 1D15
Use a shell function to make encrypting files easier:
secret () {
        output=~/"${1}".$(date +%s).enc
        gpg --encrypt --armor --output ${output} -r 0x0000 -r 0x0001 -r 0x0002 "${1}" && echo "${1} -> ${output}"
}

reveal () {
        output=$(echo "${1}" | rev | cut -c16- | rev)
        gpg --decrypt --output ${output} "${1}" && echo "${1} -> ${output}"
}
$ secret document.pdf
document.pdf -> document.pdf.1580000000.enc

$ reveal document.pdf.1580000000.enc
gpg: anonymous recipient; trying secret key 0xFF3E7D88647EBCDB ...
gpg: okay, we are the anonymous recipient.
gpg: encrypted with RSA key, ID 0x0000000000000000
document.pdf.1580000000.enc -> document.pdf

Rotating keys

PGP does not provide forward secrecy - a compromised key may be used to decrypt all past messages. Although keys stored on YubiKey are difficult to steal, it is not impossible - the key and PIN could be taken, or a vulnerability may be discovered in key hardware or random number generator used to create them, for example. Therefore, it is good practice to occassionally rotate sub-keys.
When a sub-key expires, it can either be renewed or replaced. Both actions require access to the offline master key. Renewing sub-keys by updating their expiration date indicates you are still in possession of the offline master key and is more convenient.
Replacing keys, on the other hand, is less convenient but more secure: the new sub-keys will not be able to decrypt previous messages, authenticate with SSH, etc. Contacts will need to receive the updated public key and any encrypted secrets need to be decrypted and re-encrypted to new sub-keys to be usable. This process is functionally equivalent to "losing" the YubiKey and provisioning a new one. However, you will always be able to decrypt previous messages using the offline encrypted backup of the original keys.
Neither rotation method is superior and it's up to personal philosophy on identity management and individual threat model to decide which one to use, or whether to expire sub-keys at all. Ideally, sub-keys would be ephemeral: used only once for each encryption, signing and authentication event, however in practice that is not really feasible or worthwhile with YubiKey. Advanced users may want to dedicate an offline device for more frequent key rotations and ease of provisioning.

Setup environment

To renew or rotate sub-keys, follow the same process as generating keys: boot to a secure environment, install required software and disconnect networking.
Connect the offline secret storage device with the master keys and identify the disk label:
$ sudo dmesg | tail
mmc0: new high speed SDHC card at address a001
mmcblk0: mmc0:a001 SS16G 14.8 GiB (ro)
mmcblk0: p1 p2
Decrypt and mount the offline volume:
$ sudo cryptsetup luksOpen /dev/mmcblk0p1 secret
Enter passphrase for /dev/mmcblk0p1:

$ sudo mount /dev/mapper/secret /mnt/encrypted-storage
Import the master key and configuration to a temporary working directory:
$ export GNUPGHOME=$(mktemp -d)

$ gpg --import /mnt/encrypted-storage/tmp.XXX/mastersub.key

$ cp -v /mnt/encrypted-storage/tmp.XXX/gpg.conf $GNUPGHOME
Edit the master key:
$ export KEYID=0xFF3E7D88647EBCDB

$ gpg --edit-key $KEYID

Secret key is available
[...]

Renewing sub-keys

Renewing sub-keys is simpler: you do not need to generate new keys, move keys to the YubiKey, or update any SSH public keys linked to the GPG key. All you need to do is to change the expiry time associated with the public key (which requires access to the master key you just loaded) and then to export that public key and import it on any computer where you wish to use the GPG (as distinct from the SSH) key.
To change the expiration date of all sub-keys, start by selecting all keys:
$ gpg --edit-key $KEYID

Secret key is available.

sec  rsa4096/0xFF3E7D88647EBCDB
    created: 2017-10-09  expires: never       usage: C
    trust: ultimate      validity: ultimate
ssb  rsa4096/0xBECFA3C1AE191D15
    created: 2017-10-09  expires: 2018-10-09  usage: S
ssb  rsa4096/0x5912A795E90DD2CF
    created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
    created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> key 1

Secret key is available.

sec  rsa4096/0xFF3E7D88647EBCDB
     created: 2017-10-09  expires: never       usage: C
     trust: ultimate      validity: ultimate
ssb* rsa4096/0xBECFA3C1AE191D15
     created: 2017-10-09  expires: 2018-10-09  usage: S
ssb  rsa4096/0x5912A795E90DD2CF
     created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
     created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> key 2

Secret key is available.

sec  rsa4096/0xFF3E7D88647EBCDB
     created: 2017-10-09  expires: never       usage: C
     trust: ultimate      validity: ultimate
ssb* rsa4096/0xBECFA3C1AE191D15
     created: 2017-10-09  expires: 2018-10-09  usage: S
ssb* rsa4096/0x5912A795E90DD2CF
     created: 2017-10-09  expires: 2018-10-09  usage: E
ssb  rsa4096/0x3F29127E79649A3D
     created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 

gpg> key 3

Secret key is available.

sec   rsa4096/0xFF3E7D88647EBCDB
      created: 2017-10-09  expires: never       usage: C
      trust: ultimate      validity: ultimate
ssb*  rsa4096/0xBECFA3C1AE191D15
      created: 2017-10-09  expires: 2018-10-09  usage: S
ssb*  rsa4096/0x5912A795E90DD2CF
      created: 2017-10-09  expires: 2018-10-09  usage: E
ssb*  rsa4096/0x3F29127E79649A3D
      created: 2017-10-09  expires: 2018-10-09  usage: A
[ultimate] (1). Dr Duh 
Then, use the expire command to set a new expiration date. (Despite the name, this will not cause currently valid keys to become expired).
gpg> expire
Changing expiration time for a subkey.
Please specify how long the key should be valid.
         0 = key does not expire
        = key expires in n days
      w = key expires in n weeks
      m = key expires in n months
      y = key expires in n years
Key is valid for? (0)
Follow these prompts to set a new expiration date, then quit to save your changes.
Next, export your public key:
$ gpg --export $KEYID > pubkey.gpg
Transfer that public key to the computer from which you use your GPG key, and then import it with:
$ gpg --import pubkey.gpg
This will extend the validity of your GPG key and will allow you to use it for SSH authorization. Note that you do not need to update the SSH public key located on remote servers.

Rotating keys

Rotating keys is more a bit more involved. First, follow the original steps to generate each sub-key. Previous sub-keys may be kept or deleted from the identity.
Finish by exporting new keys:
$ gpg --armor --export-secret-keys $KEYID > $GNUPGHOME/mastersub.key

$ gpg --armor --export-secret-subkeys $KEYID > $GNUPGHOME/sub.key
Copy the new temporary working directory to encrypted offline storage, which should still be mounted:
$ sudo cp -avi $GNUPGHOME /mnt/encrypted-storage
There should now be at least two versions of the master and sub-keys backed up:
$ ls /mnt/encrypted-storage
lost+found  tmp.ykhTOGjR36  tmp.2gyGnyCiHs
Unmount and close the encrypted volume:
$ sudo umount /mnt/encrypted-storage

$ sudo cryptsetup luksClose /dev/mapper/secret
Export the updated public key:
$ sudo mkdir /mnt/public

$ sudo mount /dev/mmcblk0p2 /mnt/public

$ gpg --armor --export $KEYID | sudo tee /mnt/public/$KEYID-$(date +%F).txt

$ sudo umount /mnt/public
Disconnect the storage device and follow the original steps to transfer new keys (4, 5 and 6) to YubiKey, replacing existing ones. Reboot or securely erase the GPG temporary working directory.

SSH

gpg-agent supports the OpenSSH ssh-agent protocol (enable-ssh-support), as well as Putty's Pageant on Windows (enable-putty-support). This means it can be used instead of the traditional ssh-agent / pageant. There are some differences from ssh-agent, notably that gpg-agent does not cache keys rather it converts, encrypts and stores them - persistently - as GPG keys and then makes them available to ssh clients. Any existing ssh private keys that you'd like to keep in gpg-agent should be deleted after they've been imported to the GPG agent.
When importing the key to gpg-agent, you'll be prompted for a passphrase to protect that key within GPG's key store - you may want to use the same passphrase as the original's ssh version. GPG can both cache passphrases for a determined period (ref. gpg-agent's various cache-ttl options), and since version 2.1 can store and fetch passphrases via the macOS keychain. Note than when removing the old private key after importing to gpg-agent, keep the .pub key file around for use in specifying ssh identities (e.g. ssh -i /path/to/identity.pub).
Probably the biggest thing missing from gpg-agent's ssh agent support is being able to remove keys. ssh-add -d/-D have no effect. Instead, you need to use the gpg-connect-agent utility to lookup a key's keygrip, match that with the desired ssh key fingerprint (as an MD5) and then delete that keygrip. The gnupg-users mailing list has more information.

Create configuration

Create a hardened configuration for gpg-agent by downloading drduh/config/gpg-agent.conf:
$ cd ~/.gnupg

$ wget https://raw.githubusercontent.com/drduh/config/master/gpg-agent.conf

$ grep -ve "^#" gpg-agent.conf
enable-ssh-support
default-cache-ttl 60
max-cache-ttl 120
pinentry-program /usr/bin/pinentry-curses
Important The cache-ttl options do NOT apply when using a YubiKey as a smartcard as the PIN is cached by the smartcard itself. Therefore, in order to clear the PIN from cache (smartcard equivalent to default-cache-ttl and max-cache-ttl), you need to unplug the YubiKey.
Tip Set pinentry-program /usr/bin/pinentry-gnome3 for a GUI-based prompt. If the pinentry graphical dialog doesn't show and you get this error: sign_and_send_pubkey: signing failed: agent refused operation, you may need to install the dbus-user-session package and restart the computer for the dbus user session to be fully inherited; this is because behind the scenes, pinentry complains about No $DBUS_SESSION_BUS_ADDRESS found, falls back to curses but doesn't find the expected tty.
On macOS, use brew install pinentry-mac and set the program path to pinentry-program /usr/local/bin/pinentry-mac or pinentry-program /usr/local/MacGPG2/libexec/pinentry-mac.app/Contents/MacOS/pinentry-mac if using MacGPG Suite.

Replace agents

To launch gpg-agent for use by SSH, use the gpg-connect-agent /bye or gpgconf --launch gpg-agent commands.
Add these to the shell rc file:
export GPG_TTY="$(tty)"
export SSH_AUTH_SOCK="/run/user/$UID/gnupg/S.gpg-agent.ssh"
gpg-connect-agent updatestartuptty /bye > /dev/null
On modern systems, gpgconf --list-dirs agent-ssh-socket will automatically set SSH_AUTH_SOCK to the correct value and is better than hard-coding to run/user/$UID/gnupg/S.gpg-agent.ssh, if available:
export GPG_TTY="$(tty)"
export SSH_AUTH_SOCK=$(gpgconf --list-dirs agent-ssh-socket)
gpgconf --launch gpg-agent
Note that SSH_AUTH_SOCK normally only needs to be set on the local laptop (workstation), where the YubiKey is plugged in. On the remote server that we SSH into, ssh will automatically set SSH_AUTH_SOCK to something like /tmp/ssh-mXzCzYT2Np/agent.7541 when we connect. We therefore do NOT manually set SSH_AUTH_SOCK on the server - doing so would break SSH Agent Forwarding.

Copy public key

Note It is not necessary to import the corresponding GPG public key in order to use SSH.
Copy and paste the output from ssh-add to the server's authorized_keys file:
$ ssh-add -L
ssh-rsa AAAAB4NzaC1yc2EAAAADAQABAAACAz[...]zreOKM+HwpkHzcy9DQcVG2Nw== cardno:000605553211

(Optional) Save public key for identity file configuration

By default, SSH attempts to use all the identities available via the agent. It's often a good idea to manage exactly which keys SSH will use to connect to a server, for example to separate different roles or to avoid being fingerprinted by untrusted ssh servers. To do this you'll need to use the command line argument -i [identity_file] or the IdentityFile and IdentitiesOnly options in .ssh/config.
The argument provided to IdentityFile is traditionally the path to the private key file (for example IdentityFile ~/.ssh/id_rsa). For the YubiKey - indeed, in general for keys stored in an ssh agent - IdentityFile should point to the public key file, ssh will select the appropriate private key from those available via the ssh agent. To prevent ssh from trying all keys in the agent use the IdentitiesOnly yes option along with one or more -i or IdentityFile options for the target host.
To reiterate, with IdentitiesOnly yesssh will not automatically enumerate public keys loaded into ssh-agent or gpg-agent. This means publickey authentication will not proceed unless explicitly named by ssh -i [identity_file] or in .ssh/config on a per-host basis.
In the case of YubiKey usage, to extract the public key from the ssh agent:
$ ssh-add -L | grep "cardno:000605553211" > ~/.ssh/id_rsa_yubikey.pub
Then you can explicitly associate this YubiKey-stored key for used with a host, github.com for example, as follows:
$ cat << EOF >> ~/.ssh/config
Host github.com
    IdentitiesOnly yes
    IdentityFile ~/.ssh/id_rsa_yubikey.pub
EOF

Connect with public key authentication

$ ssh git@github.com -vvv
[...]
debug2: key: cardno:000605553211 (0x1234567890),
debug1: Authentications that can continue: publickey
debug3: start over, passed a different list publickey
debug3: preferred gssapi-keyex,gssapi-with-mic,publickey,keyboard-interactive,password
debug3: authmethod_lookup publickey
debug3: remaining preferred: keyboard-interactive,password
debug3: authmethod_is_enabled publickey
debug1: Next authentication method: publickey
debug1: Offering RSA public key: cardno:000605553211
debug3: send_pubkey_test
debug2: we sent a publickey packet, wait for reply
debug1: Server accepts key: pkalg ssh-rsa blen 535
debug2: input_userauth_pk_ok: fp e5:de:a5:74:b1:3e:96:9b:85:46:e7:28:53:b4:82:c3
debug3: sign_and_send_pubkey: RSA e5:de:a5:74:b1:3e:96:9b:85:46:e7:28:53:b4:82:c3
debug1: Authentication succeeded (publickey).
[...]
Tip To make multiple connections or securely transfer many files, consider using the ControlMaster ssh option. Also see drduh/config/ssh_config.

Import SSH keys

If there are existing SSH keys that you wish to make available via gpg-agent, you'll need to import them. You should then remove the original private keys. When importing the key, gpg-agent uses the key's filename as the key's label; this makes it easier to follow where the key originated from. In this example, we're starting with just the YubiKey's key in place and importing ~/.ssh/id_rsa:
$ ssh-add -l
4096 SHA256:... cardno:00060123456 (RSA)

$ ssh-add ~/.ssh/id_rsa && rm ~/.ssh/id_rsa
When invoking ssh-add, it will prompt for the SSH key's passphrase if present, then the pinentry program will prompt and confirm for a new passphrase to use to encrypt the converted key within the GPG key store.
The migrated key will be listed in ssh-add -l:
$ ssh-add -l
4096 SHA256:... cardno:00060123456 (RSA)
2048 SHA256:... /Users/username/.ssh/id_rsa (RSA)
Or to show the keys with MD5 fingerprints, as used by gpg-connect-agent's KEYINFO and DELETE_KEY commands:
$ ssh-add -E md5 -l
4096 MD5:... cardno:00060123456 (RSA)
2048 MD5:... /Users/username/.ssh/id_rsa (RSA)
When using the key pinentry will be invoked to request the key's passphrase. The passphrase will be cached for up to 10 minutes idle time between uses, to a maximum of 2 hours.

Remote Machines (Agent Forwarding)

Note SSH Agent Forwarding can add additional risk - proceed with caution!
To use YubiKey to sign a git commit on a remote host, or ssh through another network, configure and use Agent Forwarding.
To do this, you need access to the remote machine and the YubiKey has to be set up on the host machine.
On the remote machine, edit /etc/ssh/sshd_config to set StreamLocalBindUnlink yes
Optional If you do not have root access to the remote machine to edit /etc/ssh/sshd_config, you will need to remove the socket on the remote machine before forwarding works. For example, rm /run/user/1000/gnupg/S.gpg-agent. Further information can be found on the AgentForwarding GNUPG wiki page.
Import public keys to the remote machine. This can be done by fetching from a keyserver. On the local machine, copy the public keyring to the remote machine:
$ scp ~/.gnupg/pubring.kbx remote:~/.gnupg/
You should now be able use ssh -A remote on the local machine to log into remote, and should then be able to use YubiKey as if it were connected to the remote machine. For example, using e.g. ssh-add -l on that remote machine should show the public key from the YubiKey (note cardno:). (If you don't want to have to remember to use ssh -A, you can use ForwardAgent yes in ~/.ssh/config. As a security best practice, always use ForwardAgent yes only for a single Hostname, never for all servers.)
On modern distributions, such as Fedora 30, there is typically no need to also set RemoteForward in ~/.ssh/config as detailed in the next chapter, because the right thing actually happens automatically.

Steps for older distributions

On the local machine, run:
$ gpgconf --list-dirs agent-extra-socket
This should return a path to agent-extra-socket - /run/user/1000/gnupg/S.gpg-agent.extra - though on older Linux distros (and macOS) it may be /home//.gnupg/S/gpg-agent.extra
Find the agent socket on the remote machine:
$ gpgconf --list-dirs agent-socket
This should return a path such as /run/user/1000/gnupg/S.gpg-agent
Finally, enable agent forwarding for a given machine by adding the following to the local machine's ssh config file ~/.ssh/config (your agent sockets may be different):
Host
  Hostname remote-host.tld
  ForwardAgent yes
  RemoteForward /run/user/1000/gnupg/S.gpg-agent /run/user/1000/gnupg/S.gpg-agent.extra
  # RemoteForward [remote socket] [local socket]
If you're still having problems, it may be necessary to edit gpg-agent.conf file on both the remote and local machines to add the following information:
enable-ssh-support
pinentry-program /usr/bin/pinentry-curses
extra-socket /run/user/1000/gnupg/S.gpg-agent.extra
See Issue #85 for more information and troubleshooting.

GitHub

You can use YubiKey to sign GitHub commits and tags. It can also be used for GitHub SSH authentication, allowing you to push, pull, and commit without a password.
Login to GitHub and upload SSH and PGP public keys in Settings.
To configure a signing key:
> git config --global user.signingkey $KEYID
Make sure the user.email option matches the email address associated with the PGP identity.
Now, to sign commits or tags simply use the -S option. GPG will automatically query YubiKey and prompt you for a PIN.
To authenticate:
Windows
Run the following commands:
> git config --global core.sshcommand 'plink -agent'
> git config --global gpg.program 'C:\Program Files (x86)\GnuPG\bin\gpg.exe'
You can then change the repository url to git@github.com:USERNAME/repository and any authenticated commands will be authorized by YubiKey.
Note If you encounter the error gpg: signing failed: No secret key - run gpg --card-status with YubiKey plugged in and try the git command again.

OpenBSD

Install and enable tools for use with PC/SC drivers, cards, readers, then reboot to recognize YubiKey:
$ doas pkg_add pcsc-tools

$ doas rcctl enable pcscd

$ doas reboot

Windows

Windows can already have some virtual smartcard readers installed, like the one provided for Windows Hello. To ensure your YubiKey is the correct one used by scdaemon, you should add it to its configuration. You will need your device's full name. To find out what is your device's full name, plug your YubiKey, open the Device Manager, select "View > Show hidden devices". Go to the Software Devices list, you should see something like Yubico YubiKey OTP+FIDO+CCID 0. The name slightly differs according to the model. Thanks to Scott Hanselman for sharing this information.
  • Create or edit %APPDATA%/gnupg/scdaemon.conf to add:
reader-port 
  • Edit %APPDATA%/gnupg/gpg-agent.conf to add:
enable-ssh-support
enable-putty-support
  • Open a command console, restart the agent:
> gpg-connect-agent killagent /bye
> gpg-connect-agent /bye
  • Enter > gpg --card-status to see YubiKey details.
  • Import the public key> gpg --import
  • Trust the master key
  • Retrieve the public key id: > gpg --list-public-keys
  • Export the SSH key from GPG: > gpg --export-ssh-key
Copy this key to a file for later use. It represents the public SSH key corresponding to the secret key on the YubiKey. You can upload this key to any server you wish to SSH into.
Create a shortcut that points to gpg-connect-agent /bye and place it in the startup folder shell:startup to make sure the agent starts after a system shutdown. Modify the shortcut properties so it starts in a "Minimized" window, to avoid unnecessary noise at startup.
Now you can use PuTTY for public key SSH authentication. When the server asks for public key verification, PuTTY will forward the request to GPG, which will prompt you for a PIN and authorize the login using YubiKey.

WSL

The goal here is to make the SSH client inside WSL work together with the Windows agent you are using (gpg-agent.exe in our case). Here is what we are going to achieve: WSL agent architecture
Note this works only for SSH agent forwarding. Real GPG forwarding (encryption/decryption) is actually not supported. See the weasel-pageant readme for further information.

Prerequisites

WSL configuration

Download or clone weasel-pageant.
Add eval $(/mnt/c//weasel-pageant -r -a /tmp/S.weasel-pageant) to shell rc file. Use a named socket here so it can be used in the RemoteForward directive of ~/.ssh/config. Source it with source ~/.bashrc.
Display the SSH key with $ ssh-add -l
Edit ~/.ssh/config to add the following for each host you want to use agent forwarding:
ForwardAgent yes
RemoteForward  /tmp/S.weasel-pageant
Note The remote SSH socket path can be found with gpgconf --list-dirs agent-ssh-socket

Remote host configuration

You may have to add the following to the shell rc file. On Linux, this is only required on the laptop/workstation where the YubiKey is plugged in, and NOT on the remote host server that you connect to; in fact at least on some Linux distributions, changing SSH_AUTH_SOCK on the server breaks agent forwarding.
export SSH_AUTH_SOCK=$(gpgconf --list-dirs agent-ssh-socket)
export GPG_TTY=$(tty)
Add the following to /etc/ssh/sshd_config:
AllowAgentForwarding yes
StreamLocalBindUnlink yes
And reload the SSH daemon (e.g., sudo service sshd reload).
Unplug YubiKey, disconnect or reboot. Log back in to Windows, open a WSL console and enter ssh-add -l - you should see nothing.
Plug in YubiKey, enter the same command to display the ssh key.
Log in to the remote host, you should have the pinentry dialog asking for the YubiKey pin.
On the remote host, type ssh-add -l - if you see the ssh key, that means forwarding works!
Note Agent forwarding may be chained through multiple hosts - just follow the same protocol to configure each host.

Multiple Keys

To use a single identity with multiple YubiKeys - or to replace a lost card with another - issue this command to switch keys:
$ gpg-connect-agent "scd serialno" "learn --force" /bye
Alternatively, you could delete via a script the GnuPG shadowed key - where the card serial number is stored (see GnuPG #T2291).
Put it somewhere in your $PATH. E.g.:
$ cat >> ~/.scripts/remove-keygrips.sh <<EOF
#!/usr/bin/env bash
test ! "$@" && echo "Specify a key." && exit 1
KEYGRIPS="$(gpg --with-keygrip --list-secret-keys $@ | grep Keygrip | awk '{print $3}')"
for keygrip in $KEYGRIPS
do
    rm "$HOME/.gnupg/private-keys-v1.d/$keygrip.key" 2> /dev/null
done

gpg --card-status
EOF
$ chmod +x ~/.scripts/remove-keygrips.sh
$ remove-keygrips.sh $KEYID
See discussion in Issues #19 and #112 for more information and troubleshooting steps.

Require touch

Note This is not possible on YubiKey NEO.
By default, YubiKey will perform encryption, signing and authentication operations without requiring any action from the user, after the key is plugged in and first unlocked with the PIN.
To require a touch for each key operation, install YubiKey Manager and recall the Admin PIN:
Note Older versions of YubiKey Manager use touch instead of set-touch in the following commands.
Authentication:
$ ykman openpgp set-touch aut on
Signing:
$ ykman openpgp set-touch sig on
Encryption:
$ ykman openpgp set-touch enc on
YubiKey will blink when it is waiting for a touch. On Linux you can also use yubikey-touch-detector to have an indicator or notification that YubiKey is waiting for a touch.

Email

GPG keys on YubiKey can be used with ease to encrypt and/or sign emails and attachments using Thunderbird and Enigmail. Thunderbird supports OAuth 2 authentication and can be used with Gmail. See this guide from EFF for detailed instructions.

Mailvelope on macOS

Mailvelope allows GPG keys on YubiKey to be used with Gmail and others.
Important Mailvelope does not work with the throw-keyids option set in gpg.conf.
On macOS, install gpgme using Homebrew:
$ brew install gpgme
To allow Chrome to run gpgme, edit ~/Library/Application\ Support/Google/Chrome/NativeMessagingHosts/gpgmejson.json and add:
{
    "name": "gpgmejson",
    "description": "Integration with GnuPG",
    "path": "/usr/local/bin/gpgme-json",
    "type": "stdio",
    "allowed_origins": [
        "chrome-extension://kajibbejlbohfaggdiogboambcijhkke/"
    ]
}
Edit the default path to allow Chrome to find GPG:
$ sudo launchctl config user path /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
Finally, install the Mailvelope extension from the Chrome app store.

Reset

If PIN attempts are exceeded, the card is locked and must be reset and set up again using the encrypted backup.
Copy the following script to a file and run gpg-connect-agent -R $file to lock and terminate the card. Then re-insert YubiKey to reset.
/hex
scd serialno
scd apdu 00 20 00 81 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 81 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 81 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 81 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 83 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 83 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 83 08 40 40 40 40 40 40 40 40
scd apdu 00 20 00 83 08 40 40 40 40 40 40 40 40
scd apdu 00 e6 00 00
scd apdu 00 44 00 00
/echo Card has been successfully reset.
Or use ykman:
$ ykman openpgp reset
WARNING! This will delete all stored OpenPGP keys and data and restore factory settings? [y/N]: y
Resetting OpenPGP data, don't remove your YubiKey...
Success! All data has been cleared and default PINs are set.
PIN:         123456
Reset code:  NOT SET
Admin PIN:   12345678

Notes

  1. YubiKey has two configurations: one invoked with a short press, and the other with a long press. By default, the short-press mode is configured for HID OTP - a brief touch will emit an OTP string starting with cccccccc. If you rarely use the OTP mode, you can swap it to the second configuration via the YubiKey Personalization tool. If you never use OTP, you can disable it entirely using the YubiKey Manager application (note, this not the similarly named older YubiKey NEO Manager).
  2. Programming YubiKey for GPG keys still lets you use its other configurations - U2FOTP and static password modes, for example.
  3. Setting an expiry essentially forces you to manage your subkeys and announces to the rest of the world that you are doing so. Setting an expiry on a primary key is ineffective for protecting the key from loss - whoever has the primary key can simply extend its expiry period. Revocation certificates are better suited for this purpose. It may be appropriate for your use case to set expiry dates on subkeys.
  4. To switch between two or more identities on different keys - unplug the first key and restart gpg-agent, ssh-agent and pinentry with pkill gpg-agent ; pkill ssh-agent ; pkill pinentry ; eval $(gpg-agent --daemon --enable-ssh-support), then plug in the other key and run gpg-connect-agent updatestartuptty /bye - then it should be ready for use.
  5. To use yubikeys on more than one computer with gpg: After the initial setup, import the public keys on the second workstation. Confirm gpg can see the card via gpg --card-status, Trust the public keys you imported ultimately (as above). At this point gpg --list-secret-keys should show your (trusted) key.

Troubleshooting

  • Use man gpg to understand GPG options and command-line flags.
  • If you encounter problems connecting to YubiKey with GPG - try unplugging and re-inserting YubiKey, and restarting the gpg-agent process.
  • If you receive the error, gpg: decryption failed: secret key not available - you likely need to install GnuPG version 2.x.
  • If you receive the error, Yubikey core error: no yubikey present - make sure the YubiKey is inserted correctly. It should blink once when plugged in.
  • If you still receive the error, Yubikey core error: no yubikey present - you likely need to install newer versions of yubikey-personalize as outlined in Required software.
  • If you receive the error, Yubikey core error: write error - YubiKey is likely locked. Install and run yubikey-personalization-gui to unlock it.
  • If you receive the error, Key does not match the card's capability - you likely need to use 2048 bit RSA key sizes.
  • If you receive the error, sign_and_send_pubkey: signing failed: agent refused operation - make sure you replaced ssh-agent with gpg-agent as noted above.
  • If you still receive the error, sign_and_send_pubkey: signing failed: agent refused operation - run the command gpg-connect-agent updatestartuptty /bye
  • If you still receive the error, sign_and_send_pubkey: signing failed: agent refused operation - edit ~/.gnupg/gpg-agent.conf to set a valid pinentry program path, e.g. pinentry-program /usr/local/bin/pinentry-mac on macOS.
  • If you receive the error, The agent has no identities from ssh-add -L, make sure you have installed and started scdaemon.
  • If you receive the error, Error connecting to agent: No such file or directory from ssh-add -L, the UNIX file socket that the agent uses for communication with other processes may not be set up correctly. On Debian, try export SSH_AUTH_SOCK="/run/user/$UID/gnupg/S.gpg-agent.ssh". Also see that gpgconf --list-dirs agent-ssh-socket is returning single path, to existing S.gpg-agent.ssh socket.
  • If you receive the error, Permission denied (publickey), increase ssh verbosity with the -v flag and ensure the public key from the card is being offered: Offering public key: RSA SHA256:abcdefg... cardno:00060123456. If it is, ensure you are connecting as the right user on the target system, rather than as the user on the local system. Otherwise, be sure IdentitiesOnly is not enabled for this host.
  • If SSH authentication still fails - add up to 3 -v flags to the ssh client to increase verbosity.
  • If it still fails, it may be useful to stop the background sshd daemon process service on the server (e.g. using sudo systemctl stop sshd) and instead start it in the foreground with extensive debugging output, using /usr/sbin/sshd -eddd. Note that the server will not fork and will only process one connection, therefore has to be re-started after every ssh test.
  • If you receive the error, Please insert the card with serial number: * see management of multiple keys.
  • If you receive the error, There is no assurance this key belongs to the named user or encryption failed: Unusable public key use gpg --edit-key to set trust to 5 = I trust ultimately.

Links


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廉价OTP解决方案:yubikey

首先要从什么是OTP说起。

OTP是One-Time Password的简称,中文对应的准确翻译应该叫"一次一密"。根据香农(这个人…信息论、现代密码学,以及其他乱七八糟东西的发明者,牛逼至极的人物啊!)创立的现代密码学理论,一次一密是不可能被破解的,除此之外所有的其他加密方案都至少能被暴力破解,虽然破解的难度是指数级的。(当然,香农说的一次一密不可破解是有前提条件的,具体参考维基百科上的"一次性密码本"词条)。具体来说,一次一密就是在每次加密会话过程中,对传送的明文使用不同的密钥进行加密,每次使用的密钥是随机、不可预测、不重复使用的,从而保证了加密是绝对不可破解的。

当然,我说的是简单化的一次一密的实现,实际操作过程中,密钥的长度必须大于等于明文长度,而且密钥必须是可验证的(所以也可以看成是可预测的)。真正的一次一密,等于需要一个安全信道来传送不少于明文长度的密钥,几乎是没有意义的。

其实生活中已经有很多一次一密的例子,例如中国银行的E-TOKEN、魔兽世界安全令牌、中国建设银行的动态口令卡(纸制),这些都是一次一密的。

国内的一次一密电子令牌基本上使用的是SecurID,EMC公司下属的RSA公司出品的。这种一次一密解决方案使用一个预先定义的time-based的函数计算密码,称为Time-synchronized one-time password。每个token出厂前与服务器同步时间,在出厂后,token和服务器以相同的时钟计算,每分钟变化一次。

在验证token上读取的数字时,服务端可以设置允许的误差值,例如允许前后5分钟内产生的密钥输入都认为是有效的,这样可以最大限度避免token的时钟漂移。

经仔细查证后,上文描述有误。准确的实现是:RSA的服务端验证时允许前后30秒或前后60秒内的密钥为有效密钥。服务端会保留当前token,前一token,后一token三个token值,如果用户输入与当前token一致则不做变化。如果用户输入的是前一token或后一token,服务器将记录这个SecurID的ID对应的offset,下次验证时考量这个offset。如果用户超过了这三个token的值范围,用户将被提示输入SecurID显示的下一个token,如果与上一个输入的token顺序一致,系统将判断验证通过,并记录这个较大的offset值。

这样的方案安全性很高,很多公司内部的vpn系统、线上服务器登陆系统等等都使用了SecurID进行认证。缺点很明显:价格高,据说每个的成本在¥200(网易出的那个山寨版我就不评论了…售价居然才60左右…只能说不太靠谱了…),而且需要配套RSA的服务端方案;需要电池保证时钟运作,因此存在更换token的情况。

另一种完全不同的一次一密方案是使用数学方法生成密钥序列,称为Mathematical-algorithm-based one-time password。这种算法使用数学函数生成密钥序列,然后依次使用密钥序列,从而不需要考虑时间因素。由于密钥序列生成过程中没有时间因素,实际生产的硬件token可以不包含电池供电,免去服务端与token的对时,成本可以下降,同时也没有电池耗尽更换token的担忧(更换token=安全隐患,因为需要人的参与,人永远是任何安全体系的最大漏洞…)。维基百科上举例了一个使用hash chain方法产生此类OTP的方案:找到一个单向函数f(例如任意一个hash函数),给定一个初始种子s。根据f和s产生序列:f(s), f(f(s)), f(f(f(s)))…。然后将该序列倒置,依次作为密钥使用。第三方如果偶然获取到序列中某个密钥,他就必须要通过f的反函数来计算下一个密钥,而f的单向性保证了这样的计算是不可行的。

yubikey使用的是第二种方案。它是一个廉价的OTP解决方案,10枚yubikey的平均价格是$28,由yubico提供验证服务器并提供API供开发者调用。它不需要电池供电,也没有液晶屏显示密钥。在插入电脑之后,它会被识别为一个USB键盘,在任意输入框聚焦并按一下yubikey上的硬件按钮,yubikey将自动模拟键盘输入一串一次性密钥。由于yubikey在电脑上被识别为USB键盘,它可以做到最好的免驱动支持(现在没有操作系统不支持USB键盘了吧?),可以在Windows/MacOSX/Linux上使用。关于yubikey使用的OTP生成方案,强烈建议阅读一下官方提供的文档来了解:http://yubico.com/files/Security_Evaluation_2009-09-09.pdf

要注意的是,yubikey每次插拔都会在内置的非易失性存储器上的Session Counter增加1,该Session Counter总长度为16bit,在每天插拔20次的频率下,该Counter在9年左右到达满值。这个寿命还是很让人满意的。

yubikey是一个非常开放的硬件设备,它本身的硬件实现原理、服务端架设代码、服务端API代码,都是完全开放的。从而在它之上衍生了很多开源项目与之搭配使用。从yubico的wiki页面可以看到一个简单的列表。稍微列举一下:

  • YubiRADIUS:使用yubikey产生的OTP验证用户的RADIUS服务器。该服务器由yubico提供,任何拥有yubikey的用户都可以在上面开通管理员帐号进行使用。详细使用指南:http://wiki.yubico.com/wiki/index.php/Applications:YubiRADIUS_RADIUS_Service
  • RADIUS on Premise:使用LDAP维护yubikey ID与用户的联系,自行搭建使用yubikey做验证的RADIUS服务器。OTP+VPN+RADIUS,这几乎是最安全的上网方案了。
  • YubiKey WordPress Plugin:wordpress登录过程中可使用yubikey配合原密码进行加强安全的登录
  • LastPass Login:使用yubikey作为lastpass的master password,详见@ohsc的日志。该功能需lastpass的高级会员权限,每月$1。
  • Google Apps:使用yubikey登录Google Apps。要是Gmail也能用yubikey登录,那就nb了

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